MSU

LD estimate


Juan P. Steibel

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Software

Data
PRRSV
SNP_chip
R Scripts for estimation of LD and agreement of phase.
LD_IMAGE
Summary
A set of R scripts to estimate LD and agreement of phase from haplotype data.

Platforms: Linux, Mac.

Requirements: R 2.13.0.

Authors: Juan P. Steibel,  Yvonne M. Badke

Contact: steibelj@msu.edu
Download and Run
zip file containing input files and scripts (see README file and user guide for instructions)
Documentation
User guide in pdf format
Citation
Badke, Y.M.; Bates, R.O.; Ernst, C.W.; Schwab, C. and Steibel, J.P.  Estimation of linkage disequilibrium in four US pig breeds. 2012. BMC Genomics 2012, 13:24.
To-do list
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