Dworkin Lab
Research People Publications Links
This page is full of resources that we utilize at the Dworkin Lab, but in the future will include all of our datasets and scripts for analysis. Additional Information is available at each respective page. All software is on a "use at your own risk" basis. This page is currently under development.
Programs We Like

We like these programs. They help us with our research.

Bowtie - An ultrafast memory-efficient short read aligner.

BWA - Burrows-Wheeler Aligner.

SAMtools - SAM Tools provide various utilities for manipulating alignments in the SAM format.

Gene Palette - GenePalette is a powerful cross-platform and cross-species desktop application for genome sequence visualization and navigation.

ImageJ - General Use Image manipulation program used to aquire landmarks.

Integrative Genomics Viewer - Program to view genomic data in an easy to use GUI.
Guides and Links

We find these links to be most useful. Enjoy!

How to think like a computer scientist - A great introduction to the Python programming language.

Drosophila Sequence Files - Flybase's compiled reference files for all things Drosophila.
py

Python
www.python.org
Python is a great language to do many things in biology, from parsing data to advanced sequence analysis. Here are some of the common scripts that you may be interested in...

Object of Interest.py - Something Really Cool

Object of Interest.py - Something Really Cool

Object of Interest.py - Something Really Cool

R

R
www.r-project.org
R is a great language for statistics and data analysis.

Object of Interest.r - Something Really Cool

Object of Interest.r - Something Really Cool

Object of Interest.r - Something Really Cool